Integrative analysis of spatial and single-cell transcriptome data from human pancreatic cancer reveals an intermediate cancer cell population associated with poor prognosis

Integrative analysis of spatial and single-cell transcriptome data from human pancreatic cancer reveals an intermediate cancer cell population associated with poor prognosis

2024 | Seongryong Kim, Galam Leem, Junjeong Choi, Yongjun Koh, Suho Lee, Sang-Hee Nam, Jin Su Kim, Chan Hee Park, Ho Kyung Hwang, Kyoung Il Min, Jung Hyun Jo, Hee Seung Lee, Moon Jae Chung, Jeong Youp Park, Seung Woo Park, Si Young Song, Eui-Cheol Shin, Chang Moo Kang, Seungmin Bang, and Jong-Eun Park
This study integrates single-cell RNA sequencing and spatial transcriptomic data from 17 human pancreatic cancer tissues to reveal a comprehensive landscape of pancreatic cancer cells and cancer-associated fibroblasts (CAFs). The analysis identified five distinct functional subclusters of pancreatic cancer cells and six distinct CAF subclusters. A novel cancer cell subcluster, Ep_VGLL1, was discovered, showing intermediate characteristics between the classical and basal-like subtypes, despite its prognostic value. The molecular features of Ep_VGLL1 suggest its transitional properties between the classical and basal-like subtypes, supported by spatial transcriptomic data. This integrative analysis provides a detailed understanding of the dynamic states of pancreatic cancer cells and identifies potential therapeutic targets. The study also highlights the importance of understanding the transition from classical to basal-like subtypes in the context of chemoresistance and drug resistance.This study integrates single-cell RNA sequencing and spatial transcriptomic data from 17 human pancreatic cancer tissues to reveal a comprehensive landscape of pancreatic cancer cells and cancer-associated fibroblasts (CAFs). The analysis identified five distinct functional subclusters of pancreatic cancer cells and six distinct CAF subclusters. A novel cancer cell subcluster, Ep_VGLL1, was discovered, showing intermediate characteristics between the classical and basal-like subtypes, despite its prognostic value. The molecular features of Ep_VGLL1 suggest its transitional properties between the classical and basal-like subtypes, supported by spatial transcriptomic data. This integrative analysis provides a detailed understanding of the dynamic states of pancreatic cancer cells and identifies potential therapeutic targets. The study also highlights the importance of understanding the transition from classical to basal-like subtypes in the context of chemoresistance and drug resistance.
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