Published online February 25, 2004 | Wolfgang Ludwig*, Oliver Strunk, Ralf Westram, Lothar Richter, Harald Meier1, Yadhukumar, Arno Buchner, Tina Lai, Susanne Steppi, Gangolf Jobb1, Wolfram Förster1, Igor Brettcke, Stefan Gerber, Anton W. Ginhart1, Oliver Gross, Silke Grumann1, Stefan Hermann1, Ralf Jost1, Andreas König1, Thomas Liss1, Ralph Lüßmann1, Michael May1, Björn Nonhoff1, Boris Reichel1, Robert Strehlow1, Alexandros Stamatakis1, Norbert Stuckmann1, Alexander Vilbig1, Michael Lenke1, Thomas Ludwig2, Arndt Bode1 and Karl-Heinz Schleifer
The ARB (from Latin arbor, tree) project, initiated nearly 10 years ago, is a comprehensive software environment for sequence data management and analysis. It comprises a variety of interacting tools controlled by a common graphical user interface, initially designed for ribosomal RNA data but applicable to any nucleic and amino acid sequence data. The central database stores processed primary structure data and additional descriptive information, which can be linked via local or worldwide networks. Key features include data import and export, sequence alignment, primary and secondary structure editing, profile and filter calculation, phylogenetic analyses, and probe design and evaluation. The package is widely used by numerous research groups globally. The software is developed for UNIX systems, primarily using C++ and C, with some parts in Perl and other script languages. It integrates functionalities from the GDE project and PHYLIP package, among others. The ARB package supports various data visualization methods, sequence editing modes, and advanced tools for phylogenetic treeing and probe design. Future developments focus on web-based probe target site prediction and genome analysis capabilities.The ARB (from Latin arbor, tree) project, initiated nearly 10 years ago, is a comprehensive software environment for sequence data management and analysis. It comprises a variety of interacting tools controlled by a common graphical user interface, initially designed for ribosomal RNA data but applicable to any nucleic and amino acid sequence data. The central database stores processed primary structure data and additional descriptive information, which can be linked via local or worldwide networks. Key features include data import and export, sequence alignment, primary and secondary structure editing, profile and filter calculation, phylogenetic analyses, and probe design and evaluation. The package is widely used by numerous research groups globally. The software is developed for UNIX systems, primarily using C++ and C, with some parts in Perl and other script languages. It integrates functionalities from the GDE project and PHYLIP package, among others. The ARB package supports various data visualization methods, sequence editing modes, and advanced tools for phylogenetic treeing and probe design. Future developments focus on web-based probe target site prediction and genome analysis capabilities.