Advancing genome editing with artificial intelligence: opportunities, challenges, and future directions

Advancing genome editing with artificial intelligence: opportunities, challenges, and future directions

08 January 2024 | Shriniket Dixit, Anant Kumar, Kathiravan Srinivasan, P. M. Durai Raj Vincent, Nadesh Ramu Krishnan
The article "Advancing Genome Editing with Artificial Intelligence: Opportunities, Challenges, and Future Directions" by Shriniket Dixit, Anant Kumar, Kathiravan Srinivasan, P. M. Durai Raj Vincent, and Nadesh Ramu Krishnan explores the integration of Artificial Intelligence (AI) with CRISPR-based genome editing technologies. The authors highlight the significant advancements in genome editing, particularly CRISPR-Cas9, which have revolutionized gene function studies and therapeutic strategies. AI plays a crucial role in enhancing the precision, efficiency, and affordability of genome editing, making it a powerful tool for addressing various diseases. Key contributions of the article include: 1. **AI in gRNA Design**: AI models, such as DeepCRISPR, CRISTA, and DeepHE, are used to predict optimal guide RNAs (gRNAs) for CRISPR-Cas systems. These models consider factors like genomic context, Cas protein type, on-target/off-target scores, and potential off-target effects, improving the accuracy and specificity of gRNA design. 2. **Advanced Genome Editing Techniques**: AI is utilized to optimize advanced genome editing techniques, including base editing (BED), prime editing (PED), and epigenome editing (epi-GED). AI models like BE-Hive and PE-Design help in selecting optimal editors for target sequences, ensuring precise and efficient genetic modifications. 3. **Personalized Treatments**: AI, in conjunction with genome editing and precision medicine, enables personalized treatments based on individual genetic profiles. AI analyzes patient genomic data to identify mutations, variations, and biomarkers associated with diseases, guiding the design of tailored therapies. 4. **Challenges and Future Directions**: The article also discusses the challenges in genome editing, such as high costs, off-target effects, and the need for efficient delivery methods. It outlines potential areas for future research, including optimizing deep learning network designs, using transfer learning for short data sets, and expanding beyond on-target and off-target predictions. Overall, the integration of AI with genome editing technologies holds significant promise for advancing genetics, biomedicine, and healthcare, with potential implications for human health.The article "Advancing Genome Editing with Artificial Intelligence: Opportunities, Challenges, and Future Directions" by Shriniket Dixit, Anant Kumar, Kathiravan Srinivasan, P. M. Durai Raj Vincent, and Nadesh Ramu Krishnan explores the integration of Artificial Intelligence (AI) with CRISPR-based genome editing technologies. The authors highlight the significant advancements in genome editing, particularly CRISPR-Cas9, which have revolutionized gene function studies and therapeutic strategies. AI plays a crucial role in enhancing the precision, efficiency, and affordability of genome editing, making it a powerful tool for addressing various diseases. Key contributions of the article include: 1. **AI in gRNA Design**: AI models, such as DeepCRISPR, CRISTA, and DeepHE, are used to predict optimal guide RNAs (gRNAs) for CRISPR-Cas systems. These models consider factors like genomic context, Cas protein type, on-target/off-target scores, and potential off-target effects, improving the accuracy and specificity of gRNA design. 2. **Advanced Genome Editing Techniques**: AI is utilized to optimize advanced genome editing techniques, including base editing (BED), prime editing (PED), and epigenome editing (epi-GED). AI models like BE-Hive and PE-Design help in selecting optimal editors for target sequences, ensuring precise and efficient genetic modifications. 3. **Personalized Treatments**: AI, in conjunction with genome editing and precision medicine, enables personalized treatments based on individual genetic profiles. AI analyzes patient genomic data to identify mutations, variations, and biomarkers associated with diseases, guiding the design of tailored therapies. 4. **Challenges and Future Directions**: The article also discusses the challenges in genome editing, such as high costs, off-target effects, and the need for efficient delivery methods. It outlines potential areas for future research, including optimizing deep learning network designs, using transfer learning for short data sets, and expanding beyond on-target and off-target predictions. Overall, the integration of AI with genome editing technologies holds significant promise for advancing genetics, biomedicine, and healthcare, with potential implications for human health.
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