Bacterial Community Variation in Human Body Habitats Across Space and Time

Bacterial Community Variation in Human Body Habitats Across Space and Time

2009 December 18 | Elizabeth K. Costello, Christian L. Lauber, Micah Hamady, Noah Fierer, Jeffrey I. Gordon, and Rob Knight
A study published in Science (2009) investigated the variation of bacterial communities across different body habitats in healthy adults. Researchers collected bacterial samples from up to 27 sites in 7-9 adults over four occasions. They found that community composition was primarily determined by body habitat, with high interpersonal variability within habitats and minimal temporal variability among individuals. Skin locations had more diverse communities than the gut and mouth, and skin communities varied in assembly patterns. These results suggest that the human microbiota, while personalized, varies systematically across body habitats and time, which may help in understanding how microbiome changes contribute to or prevent disease. The human body hosts complex microbial communities, with the microbiota outnumbering human cells by a factor of ten. These microbes play crucial roles in nutrition, pathogen resistance, and immune system development. Understanding the factors influencing the diversity and distribution of the microbiota is essential for comprehending human genetic and metabolic diversity. The study used a multiplexed barcoded pyrosequencing approach to survey bacterial communities, revealing that 22 bacterial phyla were present, with most sequences related to Actinobacteria, Firmicutes, Proteobacteria, and Bacteroidetes. Each habitat had a characteristic microbiota, and communities were relatively stable across individuals and time. Phylogeny-based metrics showed strong clustering by body habitat rather than by host sex, individual, or day. Skin communities varied significantly between sites, with some areas showing higher diversity than others. The study also found that skin bacterial communities exhibited predictable biogeographic patterns, influenced by environmental factors, historical exposures, or both. Experiments showed that skin bacterial communities on the forehead and volar forearm assembled differently, with the forehead showing more influence from historical exposure to tongue bacteria. These findings have implications for medicine, emphasizing the need to consider body habitats when studying microbial surveillance, understanding resistance to invasion, and transplanting beneficial microbial communities. The study highlights the high variability among individuals in every body habitat studied, including the gut, skin, and oral cavity, and the relative stability within individuals. These patterns suggest that despite high variability, microbial factors associated with disease may be identifiable using broad profiling techniques.A study published in Science (2009) investigated the variation of bacterial communities across different body habitats in healthy adults. Researchers collected bacterial samples from up to 27 sites in 7-9 adults over four occasions. They found that community composition was primarily determined by body habitat, with high interpersonal variability within habitats and minimal temporal variability among individuals. Skin locations had more diverse communities than the gut and mouth, and skin communities varied in assembly patterns. These results suggest that the human microbiota, while personalized, varies systematically across body habitats and time, which may help in understanding how microbiome changes contribute to or prevent disease. The human body hosts complex microbial communities, with the microbiota outnumbering human cells by a factor of ten. These microbes play crucial roles in nutrition, pathogen resistance, and immune system development. Understanding the factors influencing the diversity and distribution of the microbiota is essential for comprehending human genetic and metabolic diversity. The study used a multiplexed barcoded pyrosequencing approach to survey bacterial communities, revealing that 22 bacterial phyla were present, with most sequences related to Actinobacteria, Firmicutes, Proteobacteria, and Bacteroidetes. Each habitat had a characteristic microbiota, and communities were relatively stable across individuals and time. Phylogeny-based metrics showed strong clustering by body habitat rather than by host sex, individual, or day. Skin communities varied significantly between sites, with some areas showing higher diversity than others. The study also found that skin bacterial communities exhibited predictable biogeographic patterns, influenced by environmental factors, historical exposures, or both. Experiments showed that skin bacterial communities on the forehead and volar forearm assembled differently, with the forehead showing more influence from historical exposure to tongue bacteria. These findings have implications for medicine, emphasizing the need to consider body habitats when studying microbial surveillance, understanding resistance to invasion, and transplanting beneficial microbial communities. The study highlights the high variability among individuals in every body habitat studied, including the gut, skin, and oral cavity, and the relative stability within individuals. These patterns suggest that despite high variability, microbial factors associated with disease may be identifiable using broad profiling techniques.
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