Chimpanzee Reservoirs of Pandemic and Nonpandemic HIV-1

Chimpanzee Reservoirs of Pandemic and Nonpandemic HIV-1

2006 July 28; 313(5786): 523–526 | Brandon F. Keele, Fran Van Heuverswyn, Yingying Li, Elizabeth Bailes, Jun Takehisa, Mario L. Santiago, Frederic Bibollet-Ruche, Yalu Chen, Louise V. Wain, Florian Liegeois, Severin Loul, Etel Mpoudi Ngole, Yanga Bienvenue, Eric Delaporte, John F. Y. Brookfield, Paul M. Sharp, George M. Shaw, Martine Peeters, and Beatrice H. Hahn
The study reports the detection of simian immunodeficiency virus (SIV)cpz antibodies and nucleic acids in fecal samples from wild-living chimpanzees in southern Cameroon, where prevalence rates reached 29 to 35%. By analyzing endemic SIVcpz strains, the origins of pandemic (group M) and nonpandemic (group N) HIV-1 were traced to distinct, geographically isolated chimpanzee communities. These findings establish *Pan troglodytes troglodytes* as a natural reservoir of HIV-1. The study used noninvasive methods to detect SIVcpz-specific antibodies and nucleic acids in fecal samples and genotyping approaches to identify individual apes. Phylogenetic analysis revealed that SIVcpz strains from different communities formed well-separated clades, indicating distinct SIVcpz lineages. The evolutionary relationships of these strains to HIV-1 groups M and N were also analyzed, confirming that the SIVcpz strains from the MB/LB and EK communities are closely related to HIV-1 groups M and N, respectively. This study provides a clear picture of the origin of HIV-1 and the seeds of the AIDS pandemic, suggesting that the SIVcpz strain that gave rise to HIV-1 group M persisted in *P. t. troglodytes* apes in southeastern Cameroon and likely spread to Kinshasa, where the group M pandemic originated.The study reports the detection of simian immunodeficiency virus (SIV)cpz antibodies and nucleic acids in fecal samples from wild-living chimpanzees in southern Cameroon, where prevalence rates reached 29 to 35%. By analyzing endemic SIVcpz strains, the origins of pandemic (group M) and nonpandemic (group N) HIV-1 were traced to distinct, geographically isolated chimpanzee communities. These findings establish *Pan troglodytes troglodytes* as a natural reservoir of HIV-1. The study used noninvasive methods to detect SIVcpz-specific antibodies and nucleic acids in fecal samples and genotyping approaches to identify individual apes. Phylogenetic analysis revealed that SIVcpz strains from different communities formed well-separated clades, indicating distinct SIVcpz lineages. The evolutionary relationships of these strains to HIV-1 groups M and N were also analyzed, confirming that the SIVcpz strains from the MB/LB and EK communities are closely related to HIV-1 groups M and N, respectively. This study provides a clear picture of the origin of HIV-1 and the seeds of the AIDS pandemic, suggesting that the SIVcpz strain that gave rise to HIV-1 group M persisted in *P. t. troglodytes* apes in southeastern Cameroon and likely spread to Kinshasa, where the group M pandemic originated.
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