Detection and interpretation of shared genetic influences on 42 human traits

Detection and interpretation of shared genetic influences on 42 human traits

2016 July | Joseph K. Pickrell¹,², Tomaz Berisa¹, Jimmy Z. Liu¹, Laure Segurel³, Joyce Y. Tung⁴, and David Hinds⁴
A study analyzed genetic variants associated with 42 human traits using genome-wide association studies (GWAS). They identified 341 loci (at an FDR of 10%) associated with multiple traits, with some variants influencing several traits, such as a nonsynonymous variant in SLC39A8 linked to schizophrenia and Parkinson's disease. The study also identified traits sharing genetic causes, such as schizophrenia and inflammatory bowel disease. A method was developed to detect causal relationships between traits, such as increased BMI causing higher triglyceride levels. The study used GWAS data from 43 studies, covering a wide range of phenotypes, including anthropometric traits, neurological diseases, and infection susceptibility. They developed a statistical model to estimate the probability of genetic variants influencing one or both traits. The results showed clusters of related traits, such as hormonal regulation and metabolic traits, validating the principle that GWAS can identify shared mechanisms between traits. Several loci were found to influence multiple traits, including SH2B3 associated with autoimmune diseases, lipid traits, and heart disease, and ABO gene variants linked to 11 traits. The study also identified causal relationships between traits, such as BMI influencing triglyceride levels and increased LDL cholesterol affecting coronary artery disease risk. The study highlights the importance of considering multiple traits when interpreting genetic variants and designing experiments. It also notes that genetic variants influencing puberty traits often have correlated effects on BMI, height, and male pattern baldness. The findings suggest that genetic overlap between traits can be due to shared biological pathways, such as hormonal signaling. The study also discusses limitations, including the focus on common variants and the potential for underpowered detection of correlations. Overall, the study provides insights into the genetic architecture of complex traits and their potential causal relationships.A study analyzed genetic variants associated with 42 human traits using genome-wide association studies (GWAS). They identified 341 loci (at an FDR of 10%) associated with multiple traits, with some variants influencing several traits, such as a nonsynonymous variant in SLC39A8 linked to schizophrenia and Parkinson's disease. The study also identified traits sharing genetic causes, such as schizophrenia and inflammatory bowel disease. A method was developed to detect causal relationships between traits, such as increased BMI causing higher triglyceride levels. The study used GWAS data from 43 studies, covering a wide range of phenotypes, including anthropometric traits, neurological diseases, and infection susceptibility. They developed a statistical model to estimate the probability of genetic variants influencing one or both traits. The results showed clusters of related traits, such as hormonal regulation and metabolic traits, validating the principle that GWAS can identify shared mechanisms between traits. Several loci were found to influence multiple traits, including SH2B3 associated with autoimmune diseases, lipid traits, and heart disease, and ABO gene variants linked to 11 traits. The study also identified causal relationships between traits, such as BMI influencing triglyceride levels and increased LDL cholesterol affecting coronary artery disease risk. The study highlights the importance of considering multiple traits when interpreting genetic variants and designing experiments. It also notes that genetic variants influencing puberty traits often have correlated effects on BMI, height, and male pattern baldness. The findings suggest that genetic overlap between traits can be due to shared biological pathways, such as hormonal signaling. The study also discusses limitations, including the focus on common variants and the potential for underpowered detection of correlations. Overall, the study provides insights into the genetic architecture of complex traits and their potential causal relationships.
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