2009 December | Philip A. Romero and Frances H. Arnold
The article explores the concept of directed evolution, a powerful method for generating proteins with altered functions by using iterative rounds of random mutation and artificial selection. Directed evolution circumvents the challenge of understanding how a protein's sequence encodes its function, allowing researchers to discover new and useful proteins. The authors highlight the rapid evolution of proteins under strong selection pressures and the insights gained into the relationship between sequence and function. They discuss the limitations of this approach, such as the difficulty in predicting amino acid sequences that will generate specific behaviors, and the importance of understanding the molecular details of protein function.
The article also reviews the experimental strategies used in directed evolution, including the identification of a good starting sequence, creating a library of variants, screening or selecting for improved function, and repeating the process until the desired function is achieved. It emphasizes the role of mutational steps, the combinatorial explosion of possible mutations, and alternative search strategies like recombination. The authors provide examples of successful applications of directed evolution, such as the evolution of a recombinase to remove proviral HIV from the host genome, a cytochrome P450 fatty acid hydroxylase into a propane hydroxylase, and an increase in the thermostability of lipase A.
The article further discusses the insights gained from directed evolution studies, including the rapid adaptation of proteins to new functions, the role of stability in epistasis and evolvability, and the exploration of trade-offs in protein properties. It highlights the importance of understanding the molecular mechanisms of adaptation and the potential of directed evolution to address challenging problems in biology and medicine.The article explores the concept of directed evolution, a powerful method for generating proteins with altered functions by using iterative rounds of random mutation and artificial selection. Directed evolution circumvents the challenge of understanding how a protein's sequence encodes its function, allowing researchers to discover new and useful proteins. The authors highlight the rapid evolution of proteins under strong selection pressures and the insights gained into the relationship between sequence and function. They discuss the limitations of this approach, such as the difficulty in predicting amino acid sequences that will generate specific behaviors, and the importance of understanding the molecular details of protein function.
The article also reviews the experimental strategies used in directed evolution, including the identification of a good starting sequence, creating a library of variants, screening or selecting for improved function, and repeating the process until the desired function is achieved. It emphasizes the role of mutational steps, the combinatorial explosion of possible mutations, and alternative search strategies like recombination. The authors provide examples of successful applications of directed evolution, such as the evolution of a recombinase to remove proviral HIV from the host genome, a cytochrome P450 fatty acid hydroxylase into a propane hydroxylase, and an increase in the thermostability of lipase A.
The article further discusses the insights gained from directed evolution studies, including the rapid adaptation of proteins to new functions, the role of stability in epistasis and evolvability, and the exploration of trade-offs in protein properties. It highlights the importance of understanding the molecular mechanisms of adaptation and the potential of directed evolution to address challenging problems in biology and medicine.