Funnels, Pathways and the Energy Landscape of Protein Folding: A Synthesis

Funnels, Pathways and the Energy Landscape of Protein Folding: A Synthesis

11 Nov 1994 | Joseph D. Bryngelson, José Nelson Onuchic, Nicholas D. Socci, Peter G. Wolynes
The paper discusses the energy landscape of protein folding, emphasizing the statistical approach to understanding the complex process. It explains how the energy landscape can be used to describe the folding pathways and the differences between folding processes common to all sequences and those specific to individual sequences. The paper also highlights the importance of the energy landscape in interpreting experimental and simulation data, and how it can be used to analyze the folding of proteins. The energy landscape approach is shown to provide new insights into the thermodynamics and kinetics of protein folding, including the explanation of folding as a two-state first-order phase transition, the origin of metastable collapsed unfolded states, and the curved Arrhenius plots observed in experiments and simulations. The paper also discusses the relation of these ideas to folding pathways, the behavior of protein folding experiments, and the effect of mutations on folding. The success of energy landscape ideas in protein structure prediction is also described. The paper unifies several previously proposed ideas concerning the mechanism of protein folding and delimits the regions of validity of these ideas under different thermodynamic conditions. The paper also discusses the concept of frustration in protein folding, which arises from conflicting interactions and geometrical constraints. The paper concludes that the energy landscape approach provides a comprehensive framework for understanding protein folding, structure prediction, and protein engineering.The paper discusses the energy landscape of protein folding, emphasizing the statistical approach to understanding the complex process. It explains how the energy landscape can be used to describe the folding pathways and the differences between folding processes common to all sequences and those specific to individual sequences. The paper also highlights the importance of the energy landscape in interpreting experimental and simulation data, and how it can be used to analyze the folding of proteins. The energy landscape approach is shown to provide new insights into the thermodynamics and kinetics of protein folding, including the explanation of folding as a two-state first-order phase transition, the origin of metastable collapsed unfolded states, and the curved Arrhenius plots observed in experiments and simulations. The paper also discusses the relation of these ideas to folding pathways, the behavior of protein folding experiments, and the effect of mutations on folding. The success of energy landscape ideas in protein structure prediction is also described. The paper unifies several previously proposed ideas concerning the mechanism of protein folding and delimits the regions of validity of these ideas under different thermodynamic conditions. The paper also discusses the concept of frustration in protein folding, which arises from conflicting interactions and geometrical constraints. The paper concludes that the energy landscape approach provides a comprehensive framework for understanding protein folding, structure prediction, and protein engineering.
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