06 January 2006 | Ramón Díaz-Uriarte*1 and Sara Alvarez de Andrés2
The article by Ramón Díaz-Uriarte and Sara Alvarez de Andrés evaluates the use of random forest for gene selection in microarray data classification. Random forest is a classification algorithm that is well-suited for microarray data due to its ability to handle a large number of variables, multiple classes, and noisy data. The authors propose a new method for gene selection based on random forest, which aims to identify small sets of genes while maintaining high predictive accuracy. They compare the performance of their method with other classification methods (DLD, KNN, and SVM) using both simulated and real microarray data sets. The results show that random forest performs comparably to these methods and that their gene selection procedure yields very small sets of genes (often smaller than those from alternative methods) without compromising predictive accuracy. The authors also evaluate the stability of the selected genes using bootstrap samples and find that their method is robust to parameter variations. The article concludes that random forest and gene selection using random forest should become standard tools for gene selection and classification in microarray data analysis.The article by Ramón Díaz-Uriarte and Sara Alvarez de Andrés evaluates the use of random forest for gene selection in microarray data classification. Random forest is a classification algorithm that is well-suited for microarray data due to its ability to handle a large number of variables, multiple classes, and noisy data. The authors propose a new method for gene selection based on random forest, which aims to identify small sets of genes while maintaining high predictive accuracy. They compare the performance of their method with other classification methods (DLD, KNN, and SVM) using both simulated and real microarray data sets. The results show that random forest performs comparably to these methods and that their gene selection procedure yields very small sets of genes (often smaller than those from alternative methods) without compromising predictive accuracy. The authors also evaluate the stability of the selected genes using bootstrap samples and find that their method is robust to parameter variations. The article concludes that random forest and gene selection using random forest should become standard tools for gene selection and classification in microarray data analysis.