2009 November ; 10(11): 741–754 | Mo Chen and James L. Manley
The article provides a comprehensive overview of the mechanisms underlying alternative splicing regulation, a crucial process that generates genetic diversity and is essential for human development. Alternative splicing involves the removal of introns from mRNA precursors, a process facilitated by the spliceosome, a large molecular complex composed of small nuclear ribonucleoprotein particles (snRNPs) and auxiliary proteins. The article highlights the complexity of this process, which is regulated by an intricate protein-RNA network and influenced by various factors such as SR proteins, hnRNPs, and tissue-specific splicing factors.
Key points include:
1. **Spliceosome Assembly**: The assembly of the spliceosome involves the sequential binding and release of snRNPs and protein factors, leading to the formation of the C complex, which is catalytically active.
2. **Regulatory Elements**: cis-regulatory elements such as exonic splicing enhancers (ESEs), exonic splicing silencers (ESSs), intronic splicing enhancers (ISEs), and intronic splicing silencers (ISSs) play crucial roles in determining which exons are included or excluded.
3. **Protein Factors**: SR proteins and hnRNPs are key regulators that facilitate or inhibit splice site recognition and spliceosome assembly. Their interactions with other factors and their phosphorylation status can significantly influence splicing outcomes.
4. **Transcription-Coupled Regulation**: The rate of transcription elongation and the recruitment of splicing factors can affect alternative splicing, with some studies suggesting that slow transcription favors the inclusion of certain exons.
5. **Tissue-Specific Regulation**: Tissue-specific alternative splicing is regulated by tissue-specific splicing factors, which can influence the expression of epithelial cell-specific exons and contribute to tissue specificity.
6. **Post-Translational Modifications**: Post-translational modifications, particularly phosphorylation, can alter the function and localization of splicing factors, affecting splice site selection and overall splicing outcomes.
The article concludes by emphasizing the need for further research to fully understand the complex regulatory networks involved in alternative splicing and to explore its role in disease.The article provides a comprehensive overview of the mechanisms underlying alternative splicing regulation, a crucial process that generates genetic diversity and is essential for human development. Alternative splicing involves the removal of introns from mRNA precursors, a process facilitated by the spliceosome, a large molecular complex composed of small nuclear ribonucleoprotein particles (snRNPs) and auxiliary proteins. The article highlights the complexity of this process, which is regulated by an intricate protein-RNA network and influenced by various factors such as SR proteins, hnRNPs, and tissue-specific splicing factors.
Key points include:
1. **Spliceosome Assembly**: The assembly of the spliceosome involves the sequential binding and release of snRNPs and protein factors, leading to the formation of the C complex, which is catalytically active.
2. **Regulatory Elements**: cis-regulatory elements such as exonic splicing enhancers (ESEs), exonic splicing silencers (ESSs), intronic splicing enhancers (ISEs), and intronic splicing silencers (ISSs) play crucial roles in determining which exons are included or excluded.
3. **Protein Factors**: SR proteins and hnRNPs are key regulators that facilitate or inhibit splice site recognition and spliceosome assembly. Their interactions with other factors and their phosphorylation status can significantly influence splicing outcomes.
4. **Transcription-Coupled Regulation**: The rate of transcription elongation and the recruitment of splicing factors can affect alternative splicing, with some studies suggesting that slow transcription favors the inclusion of certain exons.
5. **Tissue-Specific Regulation**: Tissue-specific alternative splicing is regulated by tissue-specific splicing factors, which can influence the expression of epithelial cell-specific exons and contribute to tissue specificity.
6. **Post-Translational Modifications**: Post-translational modifications, particularly phosphorylation, can alter the function and localization of splicing factors, affecting splice site selection and overall splicing outcomes.
The article concludes by emphasizing the need for further research to fully understand the complex regulatory networks involved in alternative splicing and to explore its role in disease.