One-Tip enables comprehensive proteome coverage in minimal cells and single zygotes

One-Tip enables comprehensive proteome coverage in minimal cells and single zygotes

20 March 2024 | Zilu Ye, Pierre Sabatier, Javier Martin-Gonzalez, Akihiro Eguchi, Maico Lechner, Ole Østergaard, Jingsheng Xie, Yuan Guo, Lesley Schultz, Rafaela Truffer, Dorte B. Bekker-Jensen, Nicolai Bache, Jesper V. Olsen
One-Tip is a novel proteomics methodology that integrates efficient, one-pot sample preparation with precise, narrow-window data-independent acquisition (nDIA) analysis. This approach simplifies sample processing, enabling the reproducible identification of >9000 proteins from ~1000 HeLa cells and ~6000 proteins from single cells in early mouse embryos. The versatility of One-Tip is further demonstrated by its application in single-cell proteomics using the Uno Single Cell Dispenser™, identifying >3000 proteins per HeLa cell. Additionally, One-Tip is extended to analyze extracellular vesicles (EVs) extracted from blood plasma, identifying >3000 proteins from 16 ng EV preparation. The workflow is designed to overcome the challenges of conventional mass spectrometry-based proteomics, such as sample losses, reproducibility issues, and high costs, making it more accessible and efficient for a wide range of sample types. The study highlights the superior analytical depth and throughput of One-Tip compared to standard workflows, making it a valuable tool for modern proteomics research.One-Tip is a novel proteomics methodology that integrates efficient, one-pot sample preparation with precise, narrow-window data-independent acquisition (nDIA) analysis. This approach simplifies sample processing, enabling the reproducible identification of >9000 proteins from ~1000 HeLa cells and ~6000 proteins from single cells in early mouse embryos. The versatility of One-Tip is further demonstrated by its application in single-cell proteomics using the Uno Single Cell Dispenser™, identifying >3000 proteins per HeLa cell. Additionally, One-Tip is extended to analyze extracellular vesicles (EVs) extracted from blood plasma, identifying >3000 proteins from 16 ng EV preparation. The workflow is designed to overcome the challenges of conventional mass spectrometry-based proteomics, such as sample losses, reproducibility issues, and high costs, making it more accessible and efficient for a wide range of sample types. The study highlights the superior analytical depth and throughput of One-Tip compared to standard workflows, making it a valuable tool for modern proteomics research.
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[slides] One-Tip enables comprehensive proteome coverage in minimal cells and single zygotes | StudySpace