April 25, 2000 | Tau-Mu Yi, Yun Huang, Melvin I. Simon, and John Doyle
This paper explores the robust perfect adaptation in bacterial chemotaxis through integral feedback control. The authors propose that the robustness of perfect adaptation in bacterial chemotaxis is due to the system's inherent integral feedback control. Using techniques from control and dynamical systems theory, they demonstrate that integral control is structurally inherent in the Barkai–Leibler model and identify and characterize the key assumptions of the model. They argue that integral control is necessary for robust implementation of perfect adaptation.
Bacterial chemotaxis involves the ability to adapt to persistent input stimuli, allowing bacteria to traverse gradients of chemoeffectors by engaging in a biased random walk. The signaling apparatus for bacterial chemotaxis exhibits perfect adaptation to chemoattractants, resetting the output to the prestimulus value. The receptor complex forms with CheW and CheA, and CheA phosphorylates CheY, which stimulates tumbling. Adaptation occurs through the methylation of the receptor by CheR, which increases CheA activity, promoting CheY phosphorylation. CheB demethylates the receptor, balancing the methylation state. CheZ dephosphorylates CheY-P.
The authors show that the Barkai–Leibler model exhibits robust perfect adaptation, which is explained by integral feedback control. They identify four key assumptions necessary for the model to exhibit integral control. These assumptions include that CheB demethylates only active receptors, the kinetic rate constants of CheR and CheB are independent of the methylation state and ligand occupancy, the activity of the unmethylated receptor is negligible, and the concentration of bound CheR does not depend on the ligand level.
The paper also discusses the importance of integral feedback control in biological systems, noting that it is necessary for robust perfect adaptation. The authors argue that integral control may underlie the robustness of many homeostatic mechanisms. They also discuss the implications of their findings for understanding biological complexity and the potential for integral control in other systems, including cellular homeostasis and ecosystem balance. The paper concludes with a discussion of the broader implications of their findings for control theory and biological systems.This paper explores the robust perfect adaptation in bacterial chemotaxis through integral feedback control. The authors propose that the robustness of perfect adaptation in bacterial chemotaxis is due to the system's inherent integral feedback control. Using techniques from control and dynamical systems theory, they demonstrate that integral control is structurally inherent in the Barkai–Leibler model and identify and characterize the key assumptions of the model. They argue that integral control is necessary for robust implementation of perfect adaptation.
Bacterial chemotaxis involves the ability to adapt to persistent input stimuli, allowing bacteria to traverse gradients of chemoeffectors by engaging in a biased random walk. The signaling apparatus for bacterial chemotaxis exhibits perfect adaptation to chemoattractants, resetting the output to the prestimulus value. The receptor complex forms with CheW and CheA, and CheA phosphorylates CheY, which stimulates tumbling. Adaptation occurs through the methylation of the receptor by CheR, which increases CheA activity, promoting CheY phosphorylation. CheB demethylates the receptor, balancing the methylation state. CheZ dephosphorylates CheY-P.
The authors show that the Barkai–Leibler model exhibits robust perfect adaptation, which is explained by integral feedback control. They identify four key assumptions necessary for the model to exhibit integral control. These assumptions include that CheB demethylates only active receptors, the kinetic rate constants of CheR and CheB are independent of the methylation state and ligand occupancy, the activity of the unmethylated receptor is negligible, and the concentration of bound CheR does not depend on the ligand level.
The paper also discusses the importance of integral feedback control in biological systems, noting that it is necessary for robust perfect adaptation. The authors argue that integral control may underlie the robustness of many homeostatic mechanisms. They also discuss the implications of their findings for understanding biological complexity and the potential for integral control in other systems, including cellular homeostasis and ecosystem balance. The paper concludes with a discussion of the broader implications of their findings for control theory and biological systems.