supplemental figures and analysis: supplemental figure 1 shows decreased survival of atg5-/- chimeras compared to atg5+/+ chimeras, with survival recorded up to 31 weeks post-irradiation and stem cell reconstitution. supplemental figure 2 shows recombination of the atg5flox allele in atg5f/fcre+ thymocytes, with pcr analysis performed on dna from thymocytes of atg5f/fcre+ and atg5f/fcre- mice. two mice are shown of each genotype, with a representative gel from 4 independent experiments. supplemental figure 3 shows matrices generated from literature co-citation analysis of differentially expressed genes and citation terms associated with mitochondrial and cellular functions. (a) mitochondrial functions and (b) general cellular processes or specific t-lineage immune functions, displayed as a heatmap. the intensity of red on the heatmap denotes the extent to which each gene is co-cited with each specific term in the pubmed database.supplemental figures and analysis: supplemental figure 1 shows decreased survival of atg5-/- chimeras compared to atg5+/+ chimeras, with survival recorded up to 31 weeks post-irradiation and stem cell reconstitution. supplemental figure 2 shows recombination of the atg5flox allele in atg5f/fcre+ thymocytes, with pcr analysis performed on dna from thymocytes of atg5f/fcre+ and atg5f/fcre- mice. two mice are shown of each genotype, with a representative gel from 4 independent experiments. supplemental figure 3 shows matrices generated from literature co-citation analysis of differentially expressed genes and citation terms associated with mitochondrial and cellular functions. (a) mitochondrial functions and (b) general cellular processes or specific t-lineage immune functions, displayed as a heatmap. the intensity of red on the heatmap denotes the extent to which each gene is co-cited with each specific term in the pubmed database.