2019 July | Omar Khan, Josephine R. Giles, Sierra McDonald, Sasikanth Manne, Shin Foong Ngiow, Kunal P. Patel, Michael T. Werner, Alexander C. Huang, Katherine A. Alexander, Jennifer E. Wu, John Attanasio, Patrick Yan, Sangeeth M. George, Bertram Bengsch, Ryan P. Staube, Greg Donahue, Wei Xu, Ravi K. Amaravadi, Xiaowei Xu, Giorgos C. Karakousis, Tara C. Mitchell, Lynn M. Schuchter, Jonathan Kaye, Shelley L. Berger, E. John Wherry
TOX transcriptionally and epigenetically programs CD8+ T cell exhaustion. Exhausted CD8+ T cells (T_EX) in chronic infections and cancer exhibit limited effector function, high inhibitory receptor co-expression, and extensive transcriptional changes compared to effector (T_EFF) or memory (T_MEM) CD8+ T cells. T_EX are important clinical targets of checkpoint blockade and other immunotherapies. Epigenetically, T_EX are a distinct immune subset with a unique chromatin landscape compared to T_EFF and T_MEM. However, the mechanisms governing the transcriptional and epigenetic development of T_EX remain unknown. The study identifies the HMG-box transcription factor TOX as a central regulator of T_EX. TOX is largely dispensable for T_EFF and T_MEM formation, but is critical for exhaustion. TOX is induced by calcineurin and NFAT2 and operates in a feed-forward loop to become calcineurin independent and sustained in T_EX. Thus, robust TOX expression results in commitment to T_EX by translating persistent stimulation into a distinct T_EX transcriptional and epigenetic developmental program.
Following activation by antigen, naïve CD8+ T cells undergo extensive molecular rewiring into effector CD8+ T cells. If antigen is cleared, a subset of T_EFF persist, forming long-lived, self-renewing memory T cells capable of mounting rapid recall responses. In contrast, during chronic infections or cancer, this differentiation is diverted and T cells can instead become exhausted. Exhausted CD8+ T cells may balance partial pathogen or tumor control while restraining immunopathology. However, the consequence of restrained functionality is disease persistence and/or progression. T cell exhaustion is a common feature of many chronic infections and cancers in mice and humans. Indeed, T_EX are a major target of checkpoint blockade in patients with cancer.
T_EX are characterized by the hierarchical loss of cytokine production, high inhibitory receptor co-expression, altered metabolism, and impaired proliferative potential and survival. T_EX also display a distinct transcriptional program highlighted by altered use of key transcription factors. Moreover, recent epigenetic analysis revealed that T_EX differ from T_EFF and T_MEM by ~6000 open chromatin regions, similar to differences between other major hematopoietic lineages. Thus, T_EX are not simply a state of activation of T_EFF or T_MEM, but rather a distinct cell type. Yet, the mechanisms that initiate this T_EX fate commitment and epigenetic and transcriptional programming have remained elusive.
Here, we identify a requisite role for the HMG-box TF TOX in programming the early epigenetic events driving fate commitment of T_EX. While robustly expressed in T_EX, TOX is only transiently expressed at low levels during acute infections. Moreover, T_EFF and T_MEM can form without TOX whereas T_EX cannot. TOX isTOX transcriptionally and epigenetically programs CD8+ T cell exhaustion. Exhausted CD8+ T cells (T_EX) in chronic infections and cancer exhibit limited effector function, high inhibitory receptor co-expression, and extensive transcriptional changes compared to effector (T_EFF) or memory (T_MEM) CD8+ T cells. T_EX are important clinical targets of checkpoint blockade and other immunotherapies. Epigenetically, T_EX are a distinct immune subset with a unique chromatin landscape compared to T_EFF and T_MEM. However, the mechanisms governing the transcriptional and epigenetic development of T_EX remain unknown. The study identifies the HMG-box transcription factor TOX as a central regulator of T_EX. TOX is largely dispensable for T_EFF and T_MEM formation, but is critical for exhaustion. TOX is induced by calcineurin and NFAT2 and operates in a feed-forward loop to become calcineurin independent and sustained in T_EX. Thus, robust TOX expression results in commitment to T_EX by translating persistent stimulation into a distinct T_EX transcriptional and epigenetic developmental program.
Following activation by antigen, naïve CD8+ T cells undergo extensive molecular rewiring into effector CD8+ T cells. If antigen is cleared, a subset of T_EFF persist, forming long-lived, self-renewing memory T cells capable of mounting rapid recall responses. In contrast, during chronic infections or cancer, this differentiation is diverted and T cells can instead become exhausted. Exhausted CD8+ T cells may balance partial pathogen or tumor control while restraining immunopathology. However, the consequence of restrained functionality is disease persistence and/or progression. T cell exhaustion is a common feature of many chronic infections and cancers in mice and humans. Indeed, T_EX are a major target of checkpoint blockade in patients with cancer.
T_EX are characterized by the hierarchical loss of cytokine production, high inhibitory receptor co-expression, altered metabolism, and impaired proliferative potential and survival. T_EX also display a distinct transcriptional program highlighted by altered use of key transcription factors. Moreover, recent epigenetic analysis revealed that T_EX differ from T_EFF and T_MEM by ~6000 open chromatin regions, similar to differences between other major hematopoietic lineages. Thus, T_EX are not simply a state of activation of T_EFF or T_MEM, but rather a distinct cell type. Yet, the mechanisms that initiate this T_EX fate commitment and epigenetic and transcriptional programming have remained elusive.
Here, we identify a requisite role for the HMG-box TF TOX in programming the early epigenetic events driving fate commitment of T_EX. While robustly expressed in T_EX, TOX is only transiently expressed at low levels during acute infections. Moreover, T_EFF and T_MEM can form without TOX whereas T_EX cannot. TOX is