2014 January 16 | Yvonne Tay, John Rinn, and Pier Paolo Pandolfi
The article discusses the complex interactions among RNA species, including protein-coding mRNAs and non-coding RNAs such as lncRNAs, pseudogenes, and circular RNAs. These RNAs can act as competing endogenous RNAs (ceRNAs) by competing for binding to shared microRNAs (miRNAs), which are small non-coding regulators of gene expression. This RNA crosstalk plays a crucial role in gene regulatory networks and has implications in human development and disease.
Recent studies have shown that a large portion of the human genome is transcribed into non-coding RNAs, including small non-coding RNAs, lncRNAs, and pseudogenes. These non-coding transcripts can be divided into two major classes based on their size. LncRNAs, which range from 200 nucleotides to 100 kilobases, are involved in various biological processes, including pluripotency and immune responses. However, only a small number of lncRNAs have been functionally characterized.
The non-coding transcriptome is increasingly recognized as important in determining the complexity of higher eukaryotes and in disease pathogenesis. Functionalizing the non-coding space will provide important insights into basic physiology and disease progression.
RNA-RNA crosstalk, including miRNA-RNA competition, adds new layers of gene regulation. miRNA competition extends beyond the non-coding transcriptome and may confer a non-protein-coding function to protein-coding mRNAs. The discovery of functional ceRNA regulation in diverse species suggests that it may represent a widespread layer of gene regulation.
RNA-binding proteins (RBPs) compete to bind to specific target transcripts, affecting their stability, transport, and translation. miRNA-RNA competition also plays a role in regulating both lncRNAs and mRNAs. Artificial miRNA sponges have been shown to be effective miRNA inhibitors, and natural miRNA sponges, or ceRNAs, can act as endogenous miRNA sponges.
Pseudogenes, such as PTENP1, can regulate the expression of their cognate genes by competing for shared miRNAs. LncRNAs, such as HULC and PTCSC3, have been shown to regulate gene expression through ceRNA activity. These lncRNAs may be potent natural miRNA sponges in certain settings.
circRNAs, such as CDR1as, have been identified as effective miRNA sponges due to their high stability and multiple miRNA-binding sites. These circRNAs may represent a new class of ceRNA regulators.
mRNAs can also act as ceRNAs by sequestering miRNAs. For example, the PTEN gene has a ceRNA network that includes multiple protein-coding transcripts. The VCAN 3' UTR has been shown to modulate PTEN levels byThe article discusses the complex interactions among RNA species, including protein-coding mRNAs and non-coding RNAs such as lncRNAs, pseudogenes, and circular RNAs. These RNAs can act as competing endogenous RNAs (ceRNAs) by competing for binding to shared microRNAs (miRNAs), which are small non-coding regulators of gene expression. This RNA crosstalk plays a crucial role in gene regulatory networks and has implications in human development and disease.
Recent studies have shown that a large portion of the human genome is transcribed into non-coding RNAs, including small non-coding RNAs, lncRNAs, and pseudogenes. These non-coding transcripts can be divided into two major classes based on their size. LncRNAs, which range from 200 nucleotides to 100 kilobases, are involved in various biological processes, including pluripotency and immune responses. However, only a small number of lncRNAs have been functionally characterized.
The non-coding transcriptome is increasingly recognized as important in determining the complexity of higher eukaryotes and in disease pathogenesis. Functionalizing the non-coding space will provide important insights into basic physiology and disease progression.
RNA-RNA crosstalk, including miRNA-RNA competition, adds new layers of gene regulation. miRNA competition extends beyond the non-coding transcriptome and may confer a non-protein-coding function to protein-coding mRNAs. The discovery of functional ceRNA regulation in diverse species suggests that it may represent a widespread layer of gene regulation.
RNA-binding proteins (RBPs) compete to bind to specific target transcripts, affecting their stability, transport, and translation. miRNA-RNA competition also plays a role in regulating both lncRNAs and mRNAs. Artificial miRNA sponges have been shown to be effective miRNA inhibitors, and natural miRNA sponges, or ceRNAs, can act as endogenous miRNA sponges.
Pseudogenes, such as PTENP1, can regulate the expression of their cognate genes by competing for shared miRNAs. LncRNAs, such as HULC and PTCSC3, have been shown to regulate gene expression through ceRNA activity. These lncRNAs may be potent natural miRNA sponges in certain settings.
circRNAs, such as CDR1as, have been identified as effective miRNA sponges due to their high stability and multiple miRNA-binding sites. These circRNAs may represent a new class of ceRNA regulators.
mRNAs can also act as ceRNAs by sequestering miRNAs. For example, the PTEN gene has a ceRNA network that includes multiple protein-coding transcripts. The VCAN 3' UTR has been shown to modulate PTEN levels by