The role of dynamic conformational ensembles in biomolecular recognition

The role of dynamic conformational ensembles in biomolecular recognition

2009 November | David D. Boehr, Ruth Nussinov, and Peter E. Wright
The article discusses the role of dynamic conformational ensembles in biomolecular recognition, challenging the traditional "induced fit" model with the "conformational selection" hypothesis. It argues that proteins exist in a dynamic ensemble of conformations, and molecular recognition occurs when a ligand selects a pre-existing conformation, leading to a population shift. This model is supported by experimental evidence from protein-ligand, protein-protein, protein-DNA, and RNA-ligand interactions. The conformational selection model is contrasted with induced fit in terms of kinetics and thermodynamics, with conformational selection being more prevalent in many biological processes. NMR and other techniques have provided insights into conformational ensembles, revealing that even weakly populated conformations can play a role in molecular recognition. The article also discusses the implications of conformational selection in enzyme function, protein regulation, and molecular evolution, highlighting the importance of dynamic protein conformations in biological processes. It emphasizes the need for a more comprehensive understanding of conformational dynamics in drug design, biomolecular engineering, and molecular evolution. The study concludes that conformational selection is a fundamental mechanism in molecular recognition, and that future research should focus on understanding the role of conformational ensembles in these processes.The article discusses the role of dynamic conformational ensembles in biomolecular recognition, challenging the traditional "induced fit" model with the "conformational selection" hypothesis. It argues that proteins exist in a dynamic ensemble of conformations, and molecular recognition occurs when a ligand selects a pre-existing conformation, leading to a population shift. This model is supported by experimental evidence from protein-ligand, protein-protein, protein-DNA, and RNA-ligand interactions. The conformational selection model is contrasted with induced fit in terms of kinetics and thermodynamics, with conformational selection being more prevalent in many biological processes. NMR and other techniques have provided insights into conformational ensembles, revealing that even weakly populated conformations can play a role in molecular recognition. The article also discusses the implications of conformational selection in enzyme function, protein regulation, and molecular evolution, highlighting the importance of dynamic protein conformations in biological processes. It emphasizes the need for a more comprehensive understanding of conformational dynamics in drug design, biomolecular engineering, and molecular evolution. The study concludes that conformational selection is a fundamental mechanism in molecular recognition, and that future research should focus on understanding the role of conformational ensembles in these processes.
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