17 JUNE 2016 | Alan G. Hinnebusch, Ivery P. Ivanov, Nahum Sonenberg
The 5' untranslated region (UTR) of eukaryotic mRNAs plays a critical role in ribosome recruitment, start codon selection, and translation efficiency. The scanning mechanism is the primary method for translation initiation, involving the assembly of a 43S preinitiation complex (PIC) containing eIF2-GTP and Met-tRNAi. This PIC scans the 5'UTR for an AUG start codon, leading to the formation of a stable 48S PIC and subsequent ribosome assembly. However, exceptions exist where internal ribosome entry sites (IRESs) allow PICs to enter the 5'UTR internally.
The scanning mechanism is influenced by the sequence context of the start codon, with the Kozak consensus being optimal for AUGs. Leaky scanning can occur when an upstream AUG is flanked by unfavorable sequences, allowing the use of a downstream AUG. uORFs can also regulate translation by either stalling ribosomes or creating barriers to scanning PICs, thereby inhibiting downstream translation. The phosphorylation of eIF2α can modulate this process, affecting translation initiation and protein synthesis.
Secondary structures in the 5'UTR can influence initiation efficiency by either promoting or inhibiting scanning. The presence of a strong stem-loop structure downstream of the start codon can stall the scanning 40S subunit, reducing the probability of leaky scanning. DEAD-box RNA helicases, such as eIF4A, can overcome these structural impediments, facilitating PIC attachment and scanning.
uORFs are prevalent in mammalian mRNAs and can significantly impact translation efficiency. Their effects are regulated by various mechanisms, including the phosphorylation of eIF2α, which can alter the availability of the ternary complex (TC) and influence the reinitiation of downstream ORFs. The presence of multiple uORFs can amplify the effects of eIF2α phosphorylation on leaky scanning, leading to the production of different protein isoforms.
The 5'UTR also contains regulatory elements such as the 5'TOP motif, which is involved in mTOR-dependent translation of proteins. Additionally, viral mRNAs often use IRES elements to bypass the scanning mechanism, allowing PICs to enter the 5'UTR internally. These mechanisms are important for viral replication and survival.
Overall, the 5'UTR plays a crucial role in regulating translation initiation and efficiency, with various mechanisms involving sequence context, secondary structures, uORFs, and post-translational modifications. Understanding these mechanisms is essential for developing therapies targeting diseases associated with dysregulated translation.The 5' untranslated region (UTR) of eukaryotic mRNAs plays a critical role in ribosome recruitment, start codon selection, and translation efficiency. The scanning mechanism is the primary method for translation initiation, involving the assembly of a 43S preinitiation complex (PIC) containing eIF2-GTP and Met-tRNAi. This PIC scans the 5'UTR for an AUG start codon, leading to the formation of a stable 48S PIC and subsequent ribosome assembly. However, exceptions exist where internal ribosome entry sites (IRESs) allow PICs to enter the 5'UTR internally.
The scanning mechanism is influenced by the sequence context of the start codon, with the Kozak consensus being optimal for AUGs. Leaky scanning can occur when an upstream AUG is flanked by unfavorable sequences, allowing the use of a downstream AUG. uORFs can also regulate translation by either stalling ribosomes or creating barriers to scanning PICs, thereby inhibiting downstream translation. The phosphorylation of eIF2α can modulate this process, affecting translation initiation and protein synthesis.
Secondary structures in the 5'UTR can influence initiation efficiency by either promoting or inhibiting scanning. The presence of a strong stem-loop structure downstream of the start codon can stall the scanning 40S subunit, reducing the probability of leaky scanning. DEAD-box RNA helicases, such as eIF4A, can overcome these structural impediments, facilitating PIC attachment and scanning.
uORFs are prevalent in mammalian mRNAs and can significantly impact translation efficiency. Their effects are regulated by various mechanisms, including the phosphorylation of eIF2α, which can alter the availability of the ternary complex (TC) and influence the reinitiation of downstream ORFs. The presence of multiple uORFs can amplify the effects of eIF2α phosphorylation on leaky scanning, leading to the production of different protein isoforms.
The 5'UTR also contains regulatory elements such as the 5'TOP motif, which is involved in mTOR-dependent translation of proteins. Additionally, viral mRNAs often use IRES elements to bypass the scanning mechanism, allowing PICs to enter the 5'UTR internally. These mechanisms are important for viral replication and survival.
Overall, the 5'UTR plays a crucial role in regulating translation initiation and efficiency, with various mechanisms involving sequence context, secondary structures, uORFs, and post-translational modifications. Understanding these mechanisms is essential for developing therapies targeting diseases associated with dysregulated translation.